COB Root Analysis
The following diagrams show the hierarchy in OBO Foundry ontologies that live above the ontology-specific terms. The point of making these diagrams was to figure out what are the logical root terms in each ontology, and which upper-level parts aren’t actually useful in browsers like the OLS. This is part of the larger campaign described at OBOFoundry/OBOFoundry.github.io#2149.
How to read the following diagrams:
- blue nodes represent the parents of ontology-specific terms
- red nodes represent ontology terms. Some are children of blue nodes, and some are themselves roots of the ontology - these appear to not be aligned with an upper structure like BFO!
- black nodes represent hierarchical parents (like BFO)
These results were generated by code at https://github.com/cthoyt/cob-root-analysis/. Code licensed under MIT license. Original content licensed under CC0.
Prefix | Image |
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aism |
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amphx |
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apo |
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bspo |
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bto |
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caro |
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clao |
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clo |
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clyh |
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colao |
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cteno |
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ddanat |
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ddpheno |
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ecao |
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emapa |
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fao |
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flopo |
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hao |
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hom |
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hsapdv |
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lepao |
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ma |
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mfmo |
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mmusdv |
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oarcs |
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oba |
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olatdv |
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omp |
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pcl |
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pdumdv |
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phipo |
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plana |
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planp |
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po |
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poro |
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ppo |
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spd |
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to |
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uo |
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vt |
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xao |
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xpo |
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zfa |
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zfs |
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zp |
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