COB Root Analysis
The following diagrams show the hierarchy in OBO Foundry ontologies that live above the ontology-specific terms. The point of making these diagrams was to figure out what are the logical root terms in each ontology, and which upper-level parts aren’t actually useful in browsers like the OLS. This is part of the larger campaign described at OBOFoundry/OBOFoundry.github.io#2149.
How to read the following diagrams:
- blue nodes represent the parents of ontology-specific terms
- red nodes represent ontology terms. Some are children of blue nodes, and some are themselves roots of the ontology - these appear to not be aligned with an upper structure like BFO!
- black nodes represent hierarchical parents (like BFO)
These results were generated by code at https://github.com/cthoyt/cob-root-analysis/. Code licensed under MIT license. Original content licensed under CC0.
| Prefix | Image |
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| aism |
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| amphx |
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| apo |
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| bspo |
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| bto |
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| caro |
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| clao |
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| clo |
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| clyh |
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| colao |
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| cteno |
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| ddanat |
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| ddpheno |
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| ecao |
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| emapa |
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| fao |
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| flopo |
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| hao |
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| hom |
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| hsapdv |
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| lepao |
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| ma |
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| mfmo |
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| mmusdv |
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| oarcs |
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| oba |
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| olatdv |
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| omp |
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| pcl |
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| pdumdv |
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| phipo |
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| plana |
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| planp |
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| po |
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| poro |
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| ppo |
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| spd |
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| to |
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| uo |
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| vt |
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| xao |
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| xpo |
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| zfa |
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| zfs |
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| zp |
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