COB Root Analysis
The following diagrams show the hierarchy in OBO Foundry ontologies that live above the ontology-specific terms. The point of making these diagrams was to figure out what are the logical root terms in each ontology, and which upper-level parts aren’t actually useful in browsers like the OLS. This is part of the larger campaign described at OBOFoundry/OBOFoundry.github.io#2149.
How to read the following diagrams:
- blue nodes represent the parents of ontology-specific terms
- red nodes represent ontology terms. Some are children of blue nodes, and some are themselves roots of the ontology - these appear to not be aligned with an upper structure like BFO!
- black nodes represent hierarchical parents (like BFO)
These results were generated by code at https://github.com/cthoyt/cob-root-analysis/. Code licensed under MIT license. Original content licensed under CC0.
Prefix | Image |
---|---|
aism | |
amphx | |
apo | |
bspo | |
bto | |
caro | |
clao | |
clo | |
clyh | |
colao | |
cteno | |
ddanat | |
ddpheno | |
ecao | |
emapa | |
fao | |
flopo | |
hao | |
hom | |
hsapdv | |
lepao | |
ma | |
mfmo | |
mmusdv | |
oarcs | |
oba | |
olatdv | |
omp | |
pcl | |
pdumdv | |
phipo | |
plana | |
planp | |
po | |
poro | |
ppo | |
spd | |
to | |
uo | |
vt | |
xao | |
xpo | |
zfa | |
zfs | |
zp |