Environment Ontology
Ontology of environmental features and habitats
EnvO is a community ontology for the concise, controlled description of environments.
Envo can be cited as:
Buttigieg, P. L., Morrison, N., Smith, B., Mungall, C. J., & Lewis, S. E. (2013). The environment ontology: contextualising biological and biomedical entities. Journal of Biomedical Semantics, 4(1), 43. doi:10.1186/2041-1480-4-43
Or for latest developments:
Buttigieg, P. L., Pafilis, E., Lewis, S. E., Schildhauer, M. P., Walls, R. L., & Mungall, C. J. (2016). The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics, 7(1), 57. doi:10.1186/s13326-016-0097-6
Products
| envo.owl | main ENVO OWL release | |
| envo.json | ENVO in obographs JSON format | |
| envo.obo | ENVO in OBO Format. May be lossy | |
| envo/subsets/envo-basic.obo | OBO-Basic edition of ENVO | |
| envo/subsets/envoEmpo.owl | Earth Microbiome Project subset | |
| envo/subsets/EnvO-Lite-GSC.obo | GSC Lite subset of ENVO |
Usages
- User
- http://eol.org
- Description
- describing species habitats
- Type
- data-annotation
- Examples
- User
- http://globalbioticinteractions.org
- Description
- describing stomach contents
- Type
- data-annotation
- User
- http://www.nature.com/sdata/
- Description
- annotating datasets in data repositories
- Type
- dataset-description
- See also
- http://blogs.nature.com/scientificdata/2015/12/17/isa-explorer/
- User
- http://oceans.taraexpeditions.org/en/
- Description
- Samples collected during Tara Oceans expedition are annotated with ENVO
- Examples
- User
- https://www.ncbi.nlm.nih.gov/
- Description
- Annotation of habitats of microbes
- Examples
- User
- https://www.planetmicrobe.org/project/
- Description
- Annotation and semantic search over microbial data sets
- Examples
- ID Space
- envo
- PURL
- http://purl.obolibrary.org/obo/envo.owl
- License
- CC-BY
- Homepage
- http://environmentontology.org/
- https://github.com/EnvironmentOntology/envo
- Contact
- Pier Luigi Buttigieg
- Trackers
- https://github.com/EnvironmentOntology/envo/issues/
- Domain
- environment
- Cite
- The environment ontology: contextualising biological and biomedical entities
- The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
- Dependencies
- uberon
- pco
- ro
- chebi
- ncbitaxon
- foodon
- po
- go
- Jobs
-
