Community

Organizations

• Member at International Society of Biocuration (2021 - )
• Volunteer at CoronaWhy (2020 - 2021)
• Member at OpenBEL Consortium (2017 - )
• Member at Erasmus Student Network Bonn (2016 - )
• Member at American Chemical Society (2011 - 2022)

Service

• International Society of Biocuration (Executive Committee)
• ICBO 2024 (Program Committee)
• 2023 Workshop on Prefixes, CURIEs, and IRIs (Organizer)
• Biocuration 2024 (Organizing Committee)
• Biocuration 2023 (Co-chair)
• 2022 Workshop on Prefixes, CURIEs, and IRIs (Organizer)
• ICBO 2022 Workshop on Ontology Tools (Co-organizer)
• ICBO 2022 (Program Committee)
• ISMB 2022 (Bio-Ontologies/BOSC joint session) (Program Committee)
• Biocuration 2022 (Organizing Committee)
• 2021 Workshop on Prefixes, CURIEs, and IRIs (Organizer)

Collaborators

The following is a list of my close, consistent collaborators:

Northeastern University
Boston, MA, USA

Pacific Northwest National Laboratory
Richland, WA, USA

My past/sporadic collaborators include:

• Fraunhofer SCAI
• Fraunhofer IAIS
• Fraunhofer Center for Machine Learning
• Ludwig-Maximilians-Universität München
• AstraZeneca - Molecular AI
• AstraZeneca - BIKG
• Mila
• University of Bonn
• University of California, San Diego

Funding

	Name	Funder	Award	PI
	Advancing Data Integration and Discovery in Biomedicine with the Bioregistry	Chan Zuckerberg Initiative (CZI)	2023-329850	Benjamin M. Gyori
RAPTER	Rapid Assessment of Platform Technologies to Expedite Response	Defense Threat Reduction Agency (DTRA)	FP00012844	Benjamin M. Gyori
MIRA	MIRA: Modeling with an Intelligent Reasoning Assistant	DARPA ASKEM Program	HR00112220036	Benjamin M. Gyori
YFA	Young Faculty Award / DARPA Director’s Fellowship Award	DARPA	W911NF2010255	Benjamin M. Gyori
ASKE	Ecosystem of Machine-maintained Models with Automated Assembly	DARPA Automating Scientific Knowledge Extraction (ASKE) / Artificial Intelligence Exploration (AIE) program	HR00111990009	Benjamin M. Gyori
FML	Interdisciplinary Research Award	Fraunhofer Center for Machine Learning	Internal	Martin Hofmann-Apitius
	Fraunhofer Service Contract	Philip Morris International	Contract	Martin Hofmann-Apitius
	Human Brain Pharmacome	Fraunhofer, under the MAVO Scheme		Martin Hofmann-Apitius
	PYBEL2NDEX	University of California, San Diego	Contract	Martin Hofmann-Apitius
	AETIONOMY	European Union (EU), European Federation of Pharmaceutical Industries and Associations (EFPIA), and Innovative Health Initiative (IMI)	115568	Martin Hofmann-Apitius

Disclosures / Conflicts of Interest

• Bearer of stock options from Enveda Biosciences

Events

1. May Institute in Boston, USA from April 29-May 10, and gave a talk
2. TS4NFDI Community Workshop in Hannover, Germany from April 8-9, 2024 and gave a talk
3. Biocuration 2024 in Faridabad, India from March 5-8, 2024 and gave a talk
4. Harvard Medical School - Laboratory of Systems Pharmacology Meeting (online) on January 19, 2024 and gave a talk
5. NIH BISTI Seminar (online) on December 7, 2023 and gave a talk
6. Winter 2023 Workshop on Prefixes, CURIEs, and IRIs (online) on November 27, 2023 and gave a talk ()
7. International Society of Biocuration Annual General Meeting (online) on October 18, 2023 and gave a talk
8. Ontologies4Chem Workshop 2023 (online) from October 11-12, 2023 and gave a talk
9. RDKit User Group Meeting 2023 in Mainz, Germany from September 20-22, 2023 and gave a talk
10. OBO Academy - Monarch Training Series (online) on September 19, 2023 and gave a talk
11. OBO Academy - Monarch Training Series (online) on September 5, 2023 and gave a talk
12. Biocuration 2023 in Padua, Italy from April 23-26, 2023 and gave a talk ()
13. Ontology Summit 2023 in , on February 15, 2023 and gave a talk
14. 2022 Workshop on Prefixes, CURIEs, and IRIs (online) on December 5, 2022 and gave a talk
15. International Conference on Biomedical Ontology (ICBO) (online) on September 26, 2022 and gave a talk
16. Ontologies4Chem Workshop 2022 (online) on September 7, 2022 and gave a talk
17. Harvard Medical School - Sorger Lab Meeting (online) on August 1, 2022 and gave a talk
18. May Institute (online) from -, and gave a talk
19. Knowledge Graph Conference (KGC 2022) (online) on May 5, 2022 and gave a talk
20. Graph Learning Benchmarks (GLB 2022) (online) on April 26, 2022 and gave a talk
21. 15th International Biocuration Conference (online) from April 7- , ()
22. Machine-Actionable Data Interoperability for Chemical Sciences (MADICES) (online) from February 7-9, 2022 and gave a talk
23. 13th International SWAT4HCLS Conference (online) from January 10-13, 2022
24. Connected Data World Workshop on Graph Machine Learning (online) on December 1, 2021
25. May Institute (online) from -, and gave a talk
26. 6th Disease Maps Community Meeting (online) from November 29-30, 2021
27. 2021 Workshop on Prefixes, CURIEs, and IRIs (online) on October 29, 2021 and gave a talk
28. RDKit User Group Meeting 2021 (online) from October 14-15, 2021
29. 4th Session of the International Society of Biocuration 2021 Virtual Conference (online) on October 5, 2021 and presented a poster
30. Graph Machine Learning in Industry (online) on September 23, 2021 and gave a talk ()
31. 12th International Conference on Biomedical Ontologies (online) from September 15-18, 2021 and gave a talk ()
32. 3rd Session of the International Society of Biocuration 2021 Virtual Conference (online) on August 17, 2021
33. AstraZeneca (online) on April 6, 2021 and gave a talk
34. INCOME Conference and Hackathon 2021 (online) from March 1-4, 2021 ()
35. WikiPathways Developers Conference Call (online) on January 6, 2021 and gave a talk
36. COVID-19 Disease Map Community Meeting (online) on July 10, 2020 and gave a talk
37. 5th Disease Maps Community Meeting (online) from November 12-October 14, ()
38. CoronaWhy (online) on May 6, 2020 and gave a talk
39. INCOME Hackathon 2020 in Bonn, Germany from February 5-7, 2020 ()
40. Workshop on Computational Models in Biology and Medicine 2020 in Bonn, Germany from February 4-5, 2020 ()
41. Computational Drug Discovery Group, University of Leiden in Leiden, Netherlands on November 5, 2019 and gave a talk
42. 4th Disease Maps Community Meeting in Seville, Spain from October 2-4, 2019 and presented a poster ()
43. Harvard Medical School in Boston, USA on July 19, 2019 and gave a talk
44. The Eighth Joint Sheffield Conference on Chemoinformatics in Sheffield, United Kingdom from June 17-19, 2019 and presented a poster ()
45. INCOME Hackathon 2019 in Frankfurt, Germany from March 18-20, 2019 ()
46. Summer School on Machine Learning in Drug Design in Leuven, Belgium from August 20-22, 2018
47. OpenBEL Community Meeting in Boston, USA on May 14, 2018 and gave a talk
48. Bio-IT World in Boston, USA from April 21-23, 2018 and gave a talk and presented a poster
49. 3rd European Conference on Translational Bioinformatics in Barcelona, Spain from April 16-17, 2018 and presented a poster ()
50. Bioinformatics Strategy Meeting Europe in Zürich, Switzerland on March 5, 2018
51. Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology in Prague, Czech Republic from July 21-25, 2017
52. American Chemical Society Fall 2015 National Meeting in Boston, USA from August 16-19, 2015 ()
53. Research, Innovation and Scholarship Expo 2015 in Boston, USA on April 9, 2015 and presented a poster ()
54. Northeast Undergraduate Research and Development Symposium in Biddeford, USA from March 7-8, 2015
55. 37th Boston Regional Inorganic Colloquium in Waltham, USA on January 17, 2015