Organizations

Service

Collaborators

The following is a list of my close, consistent collaborators:

Northeastern University Logo
Northeastern University
Boston, MA, USA
Pacific Northwest National Laboratory Logo
Pacific Northwest National Laboratory
Richland, WA, USA

My past/sporadic collaborators include:

  • Fraunhofer SCAI
  • Fraunhofer IAIS
  • Fraunhofer Center for Machine Learning
  • Ludwig-Maximilians-Universität München
  • AstraZeneca - Molecular AI
  • AstraZeneca - BIKG
  • Mila
  • University of Bonn
  • University of California, San Diego

Funding

Name Funder Award PI
Advancing Data Integration and Discovery in Biomedicine with the Bioregistry Chan Zuckerberg Initiative (CZI) 2023-329850 Benjamin M. Gyori
RAPTER Rapid Assessment of Platform Technologies to Expedite Response Defense Threat Reduction Agency (DTRA) FP00012844 Benjamin M. Gyori
MIRA MIRA: Modeling with an Intelligent Reasoning Assistant DARPA ASKEM Program HR00112220036 Benjamin M. Gyori
YFA Young Faculty Award / DARPA Director’s Fellowship Award DARPA W911NF2010255 Benjamin M. Gyori
ASKE Ecosystem of Machine-maintained Models with Automated Assembly DARPA Automating Scientific Knowledge Extraction (ASKE) / Artificial Intelligence Exploration (AIE) program HR00111990009 Benjamin M. Gyori
FML Interdisciplinary Research Award Fraunhofer Center for Machine Learning Internal Martin Hofmann-Apitius
PYBEL2NDEX University of California, San Diego Contract Martin Hofmann-Apitius

Disclosures / Conflicts of Interest

  • Bearer of stock options from Enveda Biosciences

Events

  1. Biocuration 2024 in Faridabad, India from March 5-8, 2024 and gave a talk
  2. Harvard Medical School - Laboratory of Systems Pharmacology Meeting (online) on January 19, 2024 and gave a talk
  3. NIH BISTI Seminar (online) on December 7, 2023 and gave a talk
  4. Winter 2023 Workshop on Prefixes, CURIEs, and IRIs (online) on November 27, 2023 and gave a talk ()
  5. International Society of Biocuration Annual General Meeting (online) on October 18, 2023 and gave a talk
  6. Ontologies4Chem Workshop 2023 (online) from October 11-12, 2023 and gave a talk
  7. RDKit User Group Meeting 2023 in Mainz, Germany from September 20-22, 2023 and gave a talk
  8. OBO Academy - Monarch Training Series (online) on September 19, 2023 and gave a talk
  9. OBO Academy - Monarch Training Series (online) on September 5, 2023 and gave a talk
  10. Biocuration 2023 in Padua, Italy from April 23-26, 2023 and gave a talk ()
  11. Ontology Summit 2023 in , on February 15, 2023 and gave a talk
  12. 2022 Workshop on Prefixes, CURIEs, and IRIs (online) on December 5, 2022 and gave a talk
  13. International Conference on Biomedical Ontology (ICBO) (online) on September 26, 2022 and gave a talk
  14. Ontologies4Chem Workshop 2022 (online) on September 7, 2022 and gave a talk
  15. Harvard Medical School - Sorger Lab Meeting (online) on August 1, 2022 and gave a talk
  16. Knowledge Graph Conference (KGC 2022) (online) on May 5, 2022 and gave a talk
  17. Graph Learning Benchmarks (GLB 2022) (online) on April 26, 2022 and gave a talk
  18. 15th International Biocuration Conference (online) from April 7- , ()
  19. Machine-Actionable Data Interoperability for Chemical Sciences (MADICES) (online) from February 7-9, 2022 and gave a talk
  20. 13th International SWAT4HCLS Conference (online) from January 10-13, 2022
  21. Connected Data World Workshop on Graph Machine Learning (online) on December 1, 2021
  22. 6th Disease Maps Community Meeting (online) from November 29-30, 2021
  23. 2021 Workshop on Prefixes, CURIEs, and IRIs (online) on October 29, 2021 and gave a talk
  24. RDKit User Group Meeting 2021 (online) from October 14-15, 2021
  25. 4th Session of the International Society of Biocuration 2021 Virtual Conference (online) on October 5, 2021 and presented a poster
  26. Graph Machine Learning in Industry (online) on September 23, 2021 and gave a talk ()
  27. 12th International Conference on Biomedical Ontologies (online) from September 15-18, 2021 and gave a talk ()
  28. 3rd Session of the International Society of Biocuration 2021 Virtual Conference (online) on August 17, 2021
  29. AstraZeneca (online) on April 6, 2021 and gave a talk
  30. INCOME Conference and Hackathon 2021 (online) from March 1-4, 2021 ()
  31. WikiPathways Developers Conference Call (online) on January 6, 2021 and gave a talk
  32. COVID-19 Disease Map Community Meeting (online) on July 10, 2020 and gave a talk
  33. 5th Disease Maps Community Meeting (online) from November 12-October 14, ()
  34. CoronaWhy (online) on May 6, 2020 and gave a talk
  35. INCOME Hackathon 2020 in Bonn, Germany from February 5-7, 2020 ()
  36. Workshop on Computational Models in Biology and Medicine 2020 in Bonn, Germany from February 4-5, 2020 ()
  37. Computational Drug Discovery Group, University of Leiden in Leiden, Netherlands on November 5, 2019 and gave a talk
  38. 4th Disease Maps Community Meeting in Seville, Spain from October 2-4, 2019 and presented a poster ()
  39. Harvard Medical School in Boston, USA on July 19, 2019 and gave a talk
  40. The Eighth Joint Sheffield Conference on Chemoinformatics in Sheffield, United Kingdom from June 17-19, 2019 and presented a poster ()
  41. INCOME Hackathon 2019 in Frankfurt, Germany from March 18-20, 2019 ()
  42. Summer School on Machine Learning in Drug Design in Leuven, Belgium from August 20-22, 2018
  43. OpenBEL Community Meeting in Boston, USA on May 14, 2018 and gave a talk
  44. Bio-IT World in Boston, USA from April 21-23, 2018 and gave a talk and presented a poster
  45. 3rd European Conference on Translational Bioinformatics in Barcelona, Spain from April 16-17, 2018 and presented a poster ()
  46. Bioinformatics Strategy Meeting Europe in Zürich, Switzerland on March 5, 2018
  47. Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology in Prague, Czech Republic from July 21-25, 2017
  48. American Chemical Society Fall 2015 National Meeting in Boston, USA from August 16-19, 2015 ()
  49. Research, Innovation and Scholarship Expo 2015 in Boston, USA on April 9, 2015 and presented a poster ()
  50. Northeast Undergraduate Research and Development Symposium in Biddeford, USA from March 7-8, 2015
  51. 37th Boston Regional Inorganic Colloquium in Waltham, USA on January 17, 2015